====== SOAPsnp ======
SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). Despite its name, the program is a resequencing utility that can assemble consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on the known reference.

===== Information =====

  * Version: 1.03
  * Added: March, 2018
  * Link: http://soap.genomics.org.cn/soapsnp.html

===== Usage =====

See which versions of SOAPsnp are available:
<code>$ module avail SOAPsnp</code>

Load a version of SOAPsnp into your environment and run it:
<code>$ module load SOAPsnp/1.03
$ soapsnp</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ wget http://soap.genomics.org.cn/down/SOAPsnp-v1.03.tar.gz
$ tar xf SOAPsnp-v1.03.tar.gz
$ cd SOAPsnpZ
$ make
$ sudo mkdir -p /export/apps/SOAPsnp/1.03/bin
$ sudo cp soapsnp /export/apps/SOAPsnp/1.03/bin
$ sudo cp COPYING readme release /export/apps/SOAPsnp/1.03</code>