====== Smalt ======

SMALT aligns DNA sequencing reads with a reference genome.

===== Information =====

  * Version: 0.7.6
  * Added: March, 2016
  * Link: http://www.sanger.ac.uk/science/tools/smalt-0

===== Usage =====

See which versions of smalt are available:
<code>$ module avail smalt
</code>

Load smalt
<code>$ module load smalt/0.7.6</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>
$ cd /tmp
$ wget "http://downloads.sourceforge.net/project/smalt/smalt-0.7.6.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fsmalt%2Ffiles%2F%3Fsource%3Dnavbar&ts=1458724179&use_mirror=liquidtelecom" -O smalt-0.7.6.tar.gz
$ tar -xvf smalt-0.7.6.tar.gz
$ cd smalt-0.7.6
$ scl enable devtoolset-2 bash
$ sudo mkdir -p /export/apps/smalt/0.7.6
$ sudo chown joguya:joguya /export/apps/smalt/0.7.6
$ ./configure --prefix=/export/apps/smalt/0.7.6
$ make
$ make install
$ sudo chown -R root:root /export/apps/smalt/0.7.6
</code>