====== shasta ======
De novo assembly from Oxford Nanopore reads.

===== Information =====

  * Version: 0.4.0
  * Added: September, 2019
  * Updated: March, 2020
  * Link: https://github.com/chanzuckerberg/shasta

===== Usage =====

See versions of shasta which are available:
<code>$ module avail shasta</code>

Load one version into your environment and run it:
<code>$ module load shasta/0.4.0
$ shasta</code>

**Note:** Please use the ''%%--threads%%'' option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the [[https://chanzuckerberg.github.io/shasta/CommandLineOptions.html|shasta documentation for more information]]. 

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ sudo mkdir -p /export/apps/shasta/0.4.0/bin
$ sudo wget https://github.com/chanzuckerberg/shasta/releases/download/0.4.0/shasta-Linux-0.4.0 -O /export/apps/shasta/0.4.0/bin/shasta
$ sudo chmod +x /export/apps/shasta/0.4.0/bin/shasta</code>