====== seqkit ======
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation.

===== Information =====

  * Version: 2.12.0
  * Added: February, 2018
  * Updated: February, 2026
  * Link: http://bioinf.shenwei.me/seqkit

===== Usage =====

See which versions are available:
<code>$ module avail seqkit</code>

Load one version into your environment and run it:
<code>$ module load seqkit/2.12.0
$ seqkit</code>

**N.B.**: Please use the ''-j'' option to set the number of CPU threads used by seqkit to be the same as the number of CPUs requested in your SLURM SBATCH parameters.

===== Installation ======
Notes from the sysadmin during installation:

<code>$ wget https://github.com/shenwei356/seqkit/releases/download/v2.12.0/seqkit_linux_amd64.tar.gz
$ tar xf seqkit_linux_amd64.tar.gz
$ sudo mkdir -p /export/apps/seqkit/2.12.0/bin
$ sudo cp seqkit /export/apps/seqkit/2.12.0/bin</code>