====== scythe ======
Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases.

===== Information =====

  * Version: 0.994-beta
  * Added: March, 2015
  * Link: https://github.com/vsbuffalo/scythe

===== Usage =====

=== See versions of scythe which are available ===
<code>$ module avail scythe</code>

=== Load and run scythe ===
<code>$ module load scythe
$ scythe</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ git clone git@github.com:vsbuffalo/scythe.git
$ cd scythe
$ scl enable devtoolset-2 bash
$ CC=clang make all
$ sudo mkdir -p /export/apps/scythe/0.994-beta
$ sudo cp scythe /export/apps/scythe/0.994-beta</code>