====== rgi ======

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

===== Information =====

  * Version: 6.0.2
  * Added: February, 2023
  * Link: https://github.com/arpcard/rgi

===== Usage =====

See which versions are available:
<code>$ module avail rgi</code>

Load one version into your environment and run it:
<code>$ module load rgi/6.0.2
$ rgi</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ https://github.com/arpcard/rgi/archive/refs/tags/6.0.2.tar.gz
$ tar xf 6.0.2.tar.gz
$ cd rgi-6.0.2
$ sudo mkdir -p /export/apps/rgi/6.0.2
$ sudo chown aorth:aorth /export/apps/rgi/6.0.2
$ python3 -m venv /export/apps/rgi/6.0.2/.venv
$ source /export/apps/rgi/6.0.2/.venv/bin/activate
$ pip install --upgrade pip setuptools wheel
$ pip install -r requirements.txt
$ python setup.py build
$ python setup.py test
$ python setup.py install</code>

Still not sure if there are any datasets/databases we need to set up, or if the included tests are supposed to pass...