====== rcorrector ====== Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing. ===== Information ===== * Version: 1.0.5 * Added: January, 2023 * Link: https://github.com/mourisl/Rcorrector ===== Usage ===== See versions which are available: $ module avail rcorrector Load one version into your environment and run it: $ module load rcorrector/1.0.5 $ rcorrector ===== Installation ====== Notes from the sysadmin during installation: $ cd /tmp $ wget https://github.com/mourisl/Rcorrector/archive/refs/tags/v1.0.5.tar.gz $ tar xf v1.0.5.tar.gz $ cd Rcorrector-1.0.5 $ make $ chmod +x run_rcorrector.pl $ sudo mkdir -p /export/apps/rcorrector/1.0.5/bin $ sudo cp rcorrector jellyfish/bin/jellyfish run_rcorrector.pl /export/apps/rcorrector/1.0.5/bin