====== pod5 ====== POD5 is a file format for storing nanopore dna data in an easily accessible way. The format is able to be written in a streaming manner which allows a sequencing instrument to directly write the format. Data in POD5 is stored using Apache Arrow, allowing users to consume data in many languages using standard tools. ===== Information ===== * Version: 0.3.2 * Added: December, 2023 * Link: https://github.com/nanoporetech/pod5-file-format ===== Usage ===== See versions that are available: $ module avail pod5 Load one version into your environment and run it: $ module load pod5/0.3.2 $ pod5 -v ===== Installation ====== Notes from the sysadmin during installation. $ sudo mkdir -p /export/apps/pod5/0.3.2 $ sudo chown aorth /export/apps/pod5/0.3.2 $ module load python/3.9 $ python -m venv /export/apps/pod5/0.3.2 $ source /export/apps/pod5/0.3.2/bin/activate $ pip install --upgrade pip wheel setuptools $ sudo chown -R root:root /export/apps/pod5/0.3.2