====== nextclade ======
Clade assignment, mutation calling, and sequence quality checks. This is the command line version of nextclade.

===== Information =====

  * Version: 2.11.0
  * Added: February, 2021
  * Updated: February, 2023
  * Link: https://github.com/nextstrain/nextclade

===== Usage =====

See versions which are available:
<code>$ module avail nextclade</code>

Load one version into your environment and run it:
<code>$ module load nextclade/2.11.0
$ nextclade</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ sudo mkdir -p /export/apps/nextclade/2.11.0/bin
$ sudo wget https://github.com/nextstrain/nextclade/releases/download/2.11.0/nextclade-x86_64-unknown-linux-gnu -O /export/apps/nextclade/2.11.0/bin/nextclade
$ sudo chmod +x /export/apps/nextclade/2.11.0/bin/nextclade</code>

**Note**: nextclade was previously distributed as a Javascript program, but it seems to have been ported to C++ and is now a standalone executable.