====== mothur_krona ======

A script to convert mothur taxonomy summary files to Krona XML format.

===== Information =====

  * Version: git-87499a0
  * Added: August, 2016
  * Link: https://github.com/accaldwell/mothur_krona

===== Usage =====

See which versions of mothur_krona are available:
<code>$ module avail mothur_krona</code>

Load mothur_krona
<code>$ module load mothur_krona/git-87499a0</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>
$ cd /tmp
$ git clone https://github.com/accaldwell/mothur_krona.git
$ cd mothur_krona/
$ sudo mkdir -p /export/apps/mothur_krona/git-87499a0
$ sudo cp LICENSE.txt mothur_krona_XML.py README.md /export/apps/mothur_krona/git-87499a0/
</code>

- install python lxml module—it is required by mothur_krona<code>
$ cd /tmp
$ wget https://github.com/lxml/lxml/archive/lxml-3.6.1.tar.gz
$ tar -xvf lxml-3.6.1.tar.gz
$ module load python/2.7.8
$ chown -R joguya:joguya /export/apps/python/2.7.8
$ python setup.py build
$ python setup.py install
$ chown -R root:root /export/apps/python/2.7.8
</code>