====== mirdeep2 ======

miRDeep2 discovers active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...).

===== Information =====

  * Latest version: 0.1.3
  * Added: April, 2020
  * Link: https://github.com/rajewsky-lab/mirdeep2

===== Usage =====

See versions of mirdeep2 which are available:
<code>$ module avail mirdeep2</code>

Load one version into your environment and run it:
<code>$ module load mirdeep2/0.1.3
$ miRDeep2.pl</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/rajewsky-lab/mirdeep2/archive/v0.1.3.tar.gz
$ tar xf v0.1.3.tar.gz
$ sudo yum install perl-PDF-API2.noarch
$ cd mirdeep2-0.1.3
$ touch install_successful
$ sudo mkdir -p /export/apps/mirdeep2/0.1.3
$ sudo cp -r * /export/apps/mirdeep2/0.1.3</code>