====== KMC ======
KMC is a disk-based programm for counting k-mers from (possibly gzipped) FASTQ/FASTA files.

===== Information =====

  * Version: 3.1.1
  * Added: November, 2018
  * Updated: January, 2021
  * Link: https://github.com/refresh-bio/KMC

===== Usage =====

See versions of kmc which are available:
<code>$ module avail kmc</code>

Load one version into your environment and run it:
<code>$ module load kmc/3.1.1
$ kmc</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/refresh-bio/KMC/archive/v3.1.1.tar.gz
$ tar xf v3.1.1.tar.gz
$ cd KMC-3.1.1
# Install a newer compiler for C++14 features in KMC
$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++
$ scl enable devtoolset-7 bash
$ make
$ sudo mkdir -p /export/apps/kmc/3.1.1/bin
$ sudo cp bin/* /export/apps/kmc/3.1.1/bin</code>