====== integron-finder ======
Bioinformatics tool to find integrons in bacterial genomes.

===== Information =====

  * Version: 2.0.2
  * Added: November, 2023
  * Link: https://github.com/gem-pasteur/Integron_Finder

===== Usage =====

See which versions are available:
<code>$ module avail integron-finder</code>

Load one version into your environment and run it:
<code>$ module load integron-finder/2.0.2
$ integron_finder</code>

Note: you can control the number of CPU threads used with the ''%%--cpu%%'' option. Please make sure to match this with the number of threads you specified in your SLURM SBATCH allocation.

===== Installation ======

Notes from the sysadmin during installation:

<code>$ sudo mkdir -p /export/apps/integron-finder/2.0.2
$ sudo chown aorth /export/apps/integron-finder/2.0.2
$ module load python/3.9
$ python -m venv /export/apps/integron-finder/2.0.2
$ source /export/apps/integron-finder/2.0.2/bin/activate
$ pip install integron_finder==2.0.2
$ sudo chown -R root:root /export/apps/integron-finder/2.0.2</code>