====== HISAT2 ======

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads to a population of human genomes.

===== Information =====

  * Latest Version: 2.1.0
  * Added: September, 2018
  * Link: http://ccb.jhu.edu/software/hisat2/index.shtml

===== Usage =====

See available versions of hisat2:
<code>$ module avail hisat2</code>

Load one version into your environment and run it:
<code>$ module load hisat2/2.1.0
$ hisat2</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-Linux_x86_64.zip
$ unzip hisat2-2.1.0-Linux_x86_64.zip
$ sudo cp -r hisat2-2.1.0 /export/apps/hisat2/2.1.0</code>