====== fastStructure ======

fastStructure is an algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference and is written in Python2.x. 

===== Information =====

  * Version: 1.0
  * Added: May, 2014
  * Updated: August, 2015
  * Link: https://rajanil.github.io/fastStructure/

===== Usage =====

See versions of fastStructure which are available:
<code>$ module avail fastSTRUCTURE</code>

===== Installation ======

Notes from the sysadmin during installation:
<code>
wget https://github.com/rajanil/fastStructure/archive/v1.0.tar.gz
tar -xvf v1.0.tar.gz
cd fastStructure-1.0/
module load python/2.7.8
scl enable devtoolset-2 bash
cd vars/
python setup.py build_ext --inplace
cd ../
python setup.py build_ext --inplace
chmod 755 structure.py distruct.py chooseK.py
sudo mkdir /export/apps/fastSTRUCTURE/1.0/
sudo cp -r . /export/apps/fastSTRUCTURE/1.0/
</code>