====== FASTQ demux ======
A simple program to demultiplex Illumina FASTQ files based on barcodes in the FASTQ headers.

===== Information =====

  * Version: git-dff5823f
  * Added: June, 2025
  * Link: https://github.com/Molmed/fastq_demux

===== Usage =====

See available versions:
<code>$ module avail fastq_demux</code>

Load one version into your environment and run it:
<code>$ module load fastq_demux/git-dff5823f
$ fastq_demux</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ module load python/3.10
$ sudo mkdir -p /export/apps/fastq_demux/git-dff5823f
$ sudo chown aorth /export/apps/fastq_demux/git-dff5823f
$ python -m venv /export/apps/fastq_demux/git-dff5823f/.venv
$ source /export/apps/fastq_demux/git-dff5823f/.venv/bin/activate
$ python -m pip install -U pip setuptools wheel
$ cd /var/scratch
$ git clone https://github.com/Molmed/fastq_demux
$ pip install -r requirements/prod .
$ sudo chown -R root:root /export/apps/fastq_demux/git-dff5823f</code>