====== ezclermont ======
This is a tool for using the Clermont 2013 PCR typing method for in silico analysis of E. coli whole genomes or assembled contigs.

===== Information =====

  * Version: 0.7.0
  * Added: August, 2025
  * Link: https://github.com/nickp60/EzClermont

===== Usage =====

See which versions are available:
<code>$ module avail ezclermont</code>

Load one version into your environment and run it:
<code>$ module load ezclermont/0.7.0
$ ezclermont -h</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ module load python/3.10
$ sudo mkdir -p /export/apps/ezclermont/0.7.0
$ sudo chown aorth:aorth /export/apps/ezclermont/0.7.0
$ python -m venv /export/apps/ezclermont/0.7.0
$ source /export/apps/ezclermont/0.7.0/bin/activate
$ python -m pip install -U pip setuptools wheel
$ python -m pip install ezclermont
$ sudo chown -R root:root /export/apps/ezclermont/0.7.0</code>