====== cutadapt ======
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.

===== Information =====

  * Version: 5.0
  * Added: June, 2015
  * Updated: April, 2025
  * Link: https://github.com/marcelm/cutadapt

===== Usage =====

See available versions:
<code>$ module avail cutadapt</code>

Load one version into your environment and run it:
<code>$ module load cutadapt/5.0
$ cutadapt</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ module load python/3.10 
$ sudo mkdir -p /export/apps/cutadapt/5.0
$ sudo chown aorth:aorth /export/apps/cutadapt/5.0
$ python -m venv /export/apps/cutadapt/5.0
$ python -m pip install --upgrade pip wheel setuptools
$ python -m pip install cutadapt==5.0
$ sudo chown -R root:root /export/apps/cutadapt/5.0</code>