====== CD-HIT ======
A program for clustering and comparing protein or nucleotide sequences.

===== Information =====

  * Version: 4.8.1
  * Added: August, 2016
  * Updated: March, 2021
  * Link: https://github.com/weizhongli/cdhit

===== Usage =====

See which versions of cd-hit are available:
<code>$ module avail cd-hit</code>

Load one version into your environment and run it:
<code>$ module load cd-hit/4.8.1
$ cd-hit</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/weizhongli/cdhit/releases/download/V4.8.1/cd-hit-v4.8.1-2019-0228.tar.gz
$ tar xf cd-hit-v4.8.1-2019-0228.tar.gz 
$ cd cd-hit-v4.8.1-2019-0228
$ make
$ sudo mkdir -p /export/apps/cd-hit/4.8.1
$ sudo chown aorth /export/apps/cd-hit/4.8.1
$ PREFIX=/export/apps/cd-hit/4.8.1 make install
$ sudo chown -R root:root /export/apps/cd-hit/4.8.1</code>