====== BitSeq ======

Transcript isoform level expression and differential expression estimation for RNA-seq.

===== Information =====

  * Version: 0.7.5
  * Added: March, 2016
  * Link: https://bitseq.github.io/

===== Usage =====

See which versions of bitseq are available:
<code>$ module avail bitseq
</code>

Load bitseq
<code>$ module load bitseq/0.7.5</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/BitSeq/BitSeq/archive/v0.7.5.tar.gz
$ tar -xvf v0.7.5.tar.gz
$ cd BitSeq-0.7.5/
$ scl enable devtoolset-2 bash
$ module load samtools/1.2
$ sudo mkdir -p /export/apps/bitseq/0.7.5
$ sudo cp -r bin/* biocUpdate.sh checkTR.py extractTranscriptInfo.py parseAlignment.py releaseDo.sh /export/apps/bitseq/0.7.5/
</code>