User Tools

Site Tools


wise-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

wise-software [2014/11/07 20:19]
aorth created
wise-software [2014/11/07 20:20] (current)
aorth
Line 15: Line 15:
  
 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget ftp://genome.crg.es/pub/software/geneid/geneid_v1.4.4.Jan_13_2011.tar.gz +$ wget http://ftp-stud.hs-esslingen.de/ubuntu/pool/universe/w/​wise/​wise_2.4.1.orig.tar.gz 
-$ cd geneid+$ tar xf wise_2.4.1.orig.tar.gz 
 +$ cd wise-2.4.1/​src
 $ scl enable devtoolset-2 bash $ scl enable devtoolset-2 bash
-$ make +$ sed -i '​s/​getline/​getline_new/'​ HMMer2/​sqio.c 
-$ sudo mkdir -p /​export/​apps/​geneid/1.4.4/bin +$ sed -i '23 s/​isnumber/​isdigit/'​ models/​phasemodel.c 
-$ sudo cp bin/geneid ​/​export/​apps/​geneid/1.4.4/​bin</​code>​+$ make all 
 +$ cd dyc 
 +$ make linux 
 +$ cp dyc ../bin 
 +$ cd /​tmp/​wise-2.4.1 
 +$ sudo mkdir -p /​export/​apps/​wise/2.4.1/bin 
 +$ sudo cp -v src/bin//​export/​apps/​wise/2.4.1/bin 
 +$ rm -rf src 
 +$ sudo cp -rv * /​export/​apps/​wise/​2.4.1</​code>​ 
 + 
 +Note: compile tips for Wise from here: http://​korflab.ucdavis.edu/​Datasets/​cegma/​ubuntu_instructions_1.txt
wise-software.txt · Last modified: 2014/11/07 20:20 by aorth