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wise

Information

  • Version: 2.4.1
  • Added: November, 2014

Usage

See versions of wise which are available

module avail wise

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://ftp-stud.hs-esslingen.de/ubuntu/pool/universe/w/wise/wise_2.4.1.orig.tar.gz
$ tar xf wise_2.4.1.orig.tar.gz
$ cd wise-2.4.1/src
$ scl enable devtoolset-2 bash
$ sed -i 's/getline/getline_new/' HMMer2/sqio.c
$ sed -i '23 s/isnumber/isdigit/' models/phasemodel.c
$ make all
$ cd dyc
$ make linux
$ cp dyc ../bin
$ cd /tmp/wise-2.4.1
$ sudo mkdir -p /export/apps/wise/2.4.1/bin
$ sudo cp -v src/bin/* /export/apps/wise/2.4.1/bin
$ rm -rf src
$ sudo cp -rv * /export/apps/wise/2.4.1

Note: compile tips for Wise from here: http://korflab.ucdavis.edu/Datasets/cegma/ubuntu_instructions_1.txt

wise-software.txt · Last modified: 2014/11/07 20:20 by aorth