WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
See which versions of whatshap are available:
$ module avail whatshap
Load one version into your environment and run it:
$ module load whatshap/0.16 $ whatshap
Notes from the sysadmin during installation:
$ cd /tmp $ module load python/3.6.2 $ sudo mkdir -p /export/apps/whatshap/0.16 $ sudo chown aorth:aorth /export/apps/whatshap/0.16 $ python -m venv /export/apps/whatshap/0.16 $ . /export/apps/whatshap/0.16/bin/activate $ pip3 install whatshap $ sudo chown -R root:root /export/apps/whatshap