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virusdetect-software [2018/06/06 23:10] (current)
aorth created
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 +====== VirusDetect ======
 +VirusDetect is a software package that can efficiently and exhaustively analyze large-scale sRNA sequence datasets for known and novel virus identification.
  
 +===== Information =====
 +
 +  * Version: 1.7
 +  * Added: June, 2018
 +  * Link: http://​virusdetect.feilab.net/​cgi-bin/​virusdetect/​index.cgi
 +
 +===== Usage =====
 +
 +See versions of virusdetect which are available:
 +<​code>​$ module avail virusdetect</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load virusdetect/​1.7
 +$ virus_detect.pl</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget ftp://​bioinfo.bti.cornell.edu/​pub/​program/​VirusDetect/​VirusDetect_v1.7.tar.gz
 +$ tar xf VirusDetect_v1.7.tar.gz
 +$ sudo mkdir /​export/​apps/​virusdetect
 +$ sudo cp -r VirusDetect_v1.7 /​export/​apps/​virusdetect/​1.7</​code>​
 +
 +Note that VirusDetect provides its own version of BWA, SAMtools, Velvet, and BLAST.
virusdetect-software.txt · Last modified: 2018/06/06 23:10 by aorth