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virusdetect-software

VirusDetect

VirusDetect is a software package that can efficiently and exhaustively analyze large-scale sRNA sequence datasets for known and novel virus identification.

Information

Usage

See versions of virusdetect which are available:

$ module avail virusdetect

Load one version into your environment and run it:

$ module load virusdetect/1.7
$ virus_detect.pl

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget ftp://bioinfo.bti.cornell.edu/pub/program/VirusDetect/VirusDetect_v1.7.tar.gz
$ tar xf VirusDetect_v1.7.tar.gz
$ sudo mkdir /export/apps/virusdetect
$ sudo cp -r VirusDetect_v1.7 /export/apps/virusdetect/1.7

Note that VirusDetect provides its own version of BWA, SAMtools, Velvet, and BLAST.

virusdetect-software.txt · Last modified: 2018/06/06 23:10 by aorth