VirusDetect is a software package that can efficiently and exhaustively analyze large-scale sRNA sequence datasets for known and novel virus identification.
See versions of virusdetect which are available:
$ module avail virusdetect
Load one version into your environment and run it:
$ module load virusdetect/1.7 $ virus_detect.pl
Notes from the sysadmin during installation:
$ cd /tmp $ wget ftp://bioinfo.bti.cornell.edu/pub/program/VirusDetect/VirusDetect_v1.7.tar.gz $ tar xf VirusDetect_v1.7.tar.gz $ sudo mkdir /export/apps/virusdetect $ sudo cp -r VirusDetect_v1.7 /export/apps/virusdetect/1.7
Note that VirusDetect provides its own version of BWA, SAMtools, Velvet, and BLAST.