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velvet-software

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Velvet

Sequence assembler for very short reads.

Information

Usage

See versions of velvet which are available:

$ module avail velvet

Extra information

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
$ tar xf velvet_1.2.10.tgz
$ cd velvet_1.2.10
$ scl enable devtoolset-4 bash
$ sed -i 's/MAXKMERLENGTH=[0-9].*$/MAXKMERLENGTH=111/' Makefile
$ make OPENMP=1
$ make cleanobj
$ sudo cp -r . /export/apps/velvet/1.2.10-kmer111
velvet-software.txt · Last modified: 2017/09/25 15:27 by aorth