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vcftools-software [2017/02/06 11:24]
joguya created
vcftools-software [2017/12/25 23:59] (current)
aorth
Line 1: Line 1:
 ====== VCFtools ====== ====== VCFtools ======
- 
 VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project.
  
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 0.1.14 +  * Latest Version: 0.1.15
-  * Updated: February, 2017+
   * Added: December, 2012   * Added: December, 2012
 +  * Updated: December, 2017
   * Link: https://​vcftools.github.io/​   * Link: https://​vcftools.github.io/​
  
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 <​code>​$ module avail vcftools</​code>​ <​code>​$ module avail vcftools</​code>​
  
-Load vcftools +Load one version into your environment:​ 
-<​code>​$ module load vcftools/​0.1.14</​code>​+<​code>​$ module load vcftools/​0.1.15</​code>​
  
 ===== Installation ====== ===== Installation ======
 +Notes from the sysadmin during installation:​
  
-Notes from the sysadmin during installation:​ +<​code>​$ cd /tmp 
-<​code>​ +$ wget https://​github.com/​vcftools/​vcftools/​releases/​download/​v0.1.15/​vcftools-0.1.15.tar.gz 
-$ cd /tmp +tar xf vcftools-0.1.15.tar.gz  
-$ wget -qO- "https://​github.com/​vcftools/​vcftools/​releases/​download/​v0.1.14/​vcftools-0.1.14.tar.gz" | tar xzv +cd vcftools-0.1.15 
-cd vcftools-0.1.14/ +./configure --prefix=/​export/​apps/​vcftools/​0.1.15
-$ sudo mkdir /​export/​apps/​vcftools/​0.1.14/ +
-sudo chown -R joguya:​joguya /​export/​apps/​vcftools/​0.1.14/ +
-$ scl enable devtoolset-3 bash +
-./configure --prefix=/​export/​apps/​vcftools/​0.1.14/+
 $ make -j4 $ make -j4
 +$ sudo mkdir /​export/​apps/​vcftools/​0.1.15
 +$ sudo chown aorth /​export/​apps/​vcftools/​0.1.15
 $ make install $ make install
-$ sudo chown -R root:root /​export/​apps/​vcftools/​0.1.14/ +$ sudo chown -R root:root /​export/​apps/​vcftools/​0.1.15</​code>​
-</​code>​ +
vcftools-software.txt · Last modified: 2017/12/25 23:59 by aorth