User Tools

Site Tools


vcftools-software

VCFtools

VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project.

Information

Usage

See which versions of VCFtools are available:

$ module avail vcftools

Load vcftools

$ module load vcftools/0.1.14

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO- "https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz" | tar xzv
$ cd vcftools-0.1.14/
$ sudo mkdir /export/apps/vcftools/0.1.14/
$ sudo chown -R joguya:joguya /export/apps/vcftools/0.1.14/
$ scl enable devtoolset-3 bash
$ ./configure --prefix=/export/apps/vcftools/0.1.14/
$ make -j4
$ make install
$ sudo chown -R root:root /export/apps/vcftools/0.1.14/
vcftools-software.txt · Last modified: 2017/02/06 11:24 by joguya