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using-the-cluster [2019/05/31 14:00]
jean-baka added info about compute05
using-the-cluster [2019/05/31 14:40] (current)
jean-baka [Using the Cluster]
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   * compute03: fast CPUs, but few of them   * compute03: fast CPUs, but few of them
   * compute04: batch jobs, has lots of disk space in ''/​var/​scratch''​   * compute04: batch jobs, has lots of disk space in ''/​var/​scratch''​
 +  * compute05: batch jobs, has the fastest processors (AMD EPYC)
  
 To get access to the cluster you should talk to Jean-Baka (he sits in BecA). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. To get access to the cluster you should talk to Jean-Baka (he sits in BecA). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster.
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 ^Machine ​          ​^Specifications ​               ^Uses                 ^1 hour status ​  ^ ^Machine ​          ​^Specifications ​               ^Uses                 ^1 hour status ​  ^
 |taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https://​hpc.ilri.cgiar.org/​ganglia/​graph.php?​g=load_report&​z=medium&​c=compute&​h=taurus&​m=os_name&​r=hour&​s=descending&​hc=4&​mc=2&​.gif?​}} | |taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https://​hpc.ilri.cgiar.org/​ganglia/​graph.php?​g=load_report&​z=medium&​c=compute&​h=taurus&​m=os_name&​r=hour&​s=descending&​hc=4&​mc=2&​.gif?​}} |
-|mammoth | 516 GB RAM \\ 16 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{https://​hpc.ilri.cgiar.org/​ganglia/​graph.php?​g=load_report&​z=medium&​c=compute&​h=mammoth&​m=os_name&​r=hour&​s=descending&​hc=4&​mc=2&​.gif?​}} |+|mammoth | 516 GB RAM \\ CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{https://​hpc.ilri.cgiar.org/​ganglia/​graph.php?​g=load_report&​z=medium&​c=compute&​h=mammoth&​m=os_name&​r=hour&​s=descending&​hc=4&​mc=2&​.gif?​}} |
 |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https://​hpc.ilri.cgiar.org/​ganglia/​graph.php?​g=load_report&​z=medium&​c=compute&​h=compute2&​m=os_name&​r=hour&​s=descending&​hc=4&​mc=2&​.gif?​}} | |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https://​hpc.ilri.cgiar.org/​ganglia/​graph.php?​g=load_report&​z=medium&​c=compute&​h=compute2&​m=os_name&​r=hour&​s=descending&​hc=4&​mc=2&​.gif?​}} |
 |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https://​hpc.ilri.cgiar.org/​ganglia/​graph.php?​g=load_report&​z=medium&​c=compute&​h=compute03&​m=os_name&​r=hour&​s=descending&​hc=4&​mc=2&​.gif?​}} | |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https://​hpc.ilri.cgiar.org/​ganglia/​graph.php?​g=load_report&​z=medium&​c=compute&​h=compute03&​m=os_name&​r=hour&​s=descending&​hc=4&​mc=2&​.gif?​}} |
using-the-cluster.1559300402.txt.gz · Last modified: 2019/05/31 14:00 by jean-baka