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umi-tools-software [2016/08/22 10:34] (current)
joguya created
Line 1: Line 1:
 +====== UMI-tools ======
 +
 +Tools for dealing with Unique Molecular Identifiers.
 +
 +===== Information =====
 +
 +  * Version: 0.2.3
 +  * Added: August, 2016
 +  * Link: https://​github.com/​CGATOxford/​UMI-tools
 +
 +===== Usage =====
 +
 +See which versions of umi-tools are available:
 +<​code>​$ module avail umi-tools</​code>​
 +
 +Load umi-tools
 +<​code>​$ module load umi-tools/​0.2.3</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp
 +$ wget https://​github.com/​CGATOxford/​UMI-tools/​archive/​v0.2.3.tar.gz
 +$ tar -xvf v0.2.3.tar.gz
 +$ cd UMI-tools-0.2.3
 +$ scl enable devtoolset-2 bash
 +$ module load samtools/​1.3 bcftools/​1.3 htslib/1.3
 +$ sudo chown -R joguya:​joguya /​export/​apps/​python/​2.7.8
 +$ python setup.py build
 +$ python setup.py install
 +$ sudo mkdir -p /​export/​apps/​umi-tools/​0.2.3
 +$ sudo ln -s /​export/​apps/​python/​2.7.8/​bin/​umi_tools /​export/​apps/​umi-tools/​0.2.3/​umi_tools
 +$ sudo chown -R root:root /​export/​apps/​python/​2.7.8
 +</​code>​
  
umi-tools-software.txt · Last modified: 2016/08/22 10:34 by joguya