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umi-tools-software

UMI-tools

Tools for dealing with Unique Molecular Identifiers.

Information

Usage

See which versions of umi-tools are available:

$ module avail umi-tools

Load umi-tools

$ module load umi-tools/0.2.3

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/CGATOxford/UMI-tools/archive/v0.2.3.tar.gz
$ tar -xvf v0.2.3.tar.gz
$ cd UMI-tools-0.2.3
$ scl enable devtoolset-2 bash
$ module load samtools/1.3 bcftools/1.3 htslib/1.3
$ sudo chown -R joguya:joguya /export/apps/python/2.7.8
$ python setup.py build
$ python setup.py install
$ sudo mkdir -p /export/apps/umi-tools/0.2.3
$ sudo ln -s /export/apps/python/2.7.8/bin/umi_tools /export/apps/umi-tools/0.2.3/umi_tools
$ sudo chown -R root:root /export/apps/python/2.7.8
umi-tools-software.txt · Last modified: 2016/08/22 10:34 by joguya