User Tools

Site Tools


trinotate-software

Trinotate

Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms.

Information

Usage

See versions of trinotate which are available:

$ module avail trinotate
NOTE
Trinotate.sqlite Pre-generated Resource SQLite database that contains Uniprot(swissprot and uniref90)-related annotation information is available in /export/apps/trinotate/2.0.2/ folder.
Therefore, you DO NOT need to download a new one!

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/Trinotate/Trinotate/archive/v2.0.2.tar.gz
$ tar -xvf v2.0.2.tar.gz
$ cd Trinotate-2.0.2/
$ scl enable devtoolset-2 bash
$ sudo mkdir -p /export/apps/trinotate/2.0.2
$ sudo cp -r . /export/apps/trinotate/2.0.2
trinotate-software.txt · Last modified: 2015/07/17 12:11 by joguya