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trinity-software [2018/03/27 19:00]
aorth
trinity-software [2018/03/27 19:00] (current)
aorth
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 $ Trinity</​code>​ $ Trinity</​code>​
  
-**Notes about running Trinity:** +Notes about running Trinity: 
-  * Please use the **−−full_cleanup** option so that Trinity can clean up after itself by removing all the intermediary files it has created except for the final fasta results+  * Please use the ''​−−full_cleanup'' ​option so that Trinity can clean up after itself by removing all the intermediary files it has created except for the final fasta results
   * Trinity creates millions of small files, which is inefficient and causes problems on the HPC storage server, so you please direct the output from these jobs to a directory inside ///​var/​scratch//​ instead of your home folder.   * Trinity creates millions of small files, which is inefficient and causes problems on the HPC storage server, so you please direct the output from these jobs to a directory inside ///​var/​scratch//​ instead of your home folder.
   * For example:   * For example:
trinity-software.txt · Last modified: 2018/03/27 19:00 by aorth