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Trinity assembles transcript sequences from Illumina RNA-Seq data.



See versions of trinity which are available

module avail trinity

Note: Trinity creates millions of small files – which causes problems on the HPC storage server – so you must direct output from these jobs to /var/scratch instead of your home folder.


Notes from the sysadmin during installation:

$ cd ~/src
$ wget
$ tar xf v2.0.3.tar.gz
$ cd trinityrnaseq-2.0.3
$ sudo mkdir /export/apps/trinity/v2.0.3
$ sudo chown aorth /export/apps/trinity/v2.0.3
$ cp -r * /export/apps/trinity/v2.0.3
$ scl enable devtoolset-2 bash
$ make
$ make plugins
$ sudo chown -R root:root /export/apps/trinity/v2.0.3
trinity-software.1426865317.txt.gz · Last modified: 2015/03/20 15:28 by aorth