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tophat-software [2014/10/17 08:29]
joguya
tophat-software [2015/07/23 09:33]
joguya [Installation]
Line 3: Line 3:
   * Link: http://ccb.jhu.edu/software/tophat/   * Link: http://ccb.jhu.edu/software/tophat/
  
 +===== v2.0.11 =====
 +  * Version: 2.0.11
 +  * Link: http://ccb.jhu.edu/software/tophat/index.shtml
 +
 +==== Usage ====
 +  * show available versions: <code>$ module avail tophat2
 +
 +---------------------------------------------------------------------------------------------- /etc/modulefiles/ilri ----------------------------------------------------------------------------------------------
 +tophat2/2.0.11 tophat2/2.0.13 tophat2/2.0.3  tophat2/2.0.8b
 +</code>
 +  * load v2.0.13:<code>$ module load tophat2/2.0.11</code>
 +  * show help info:<code>$ tophat2 --help</code>
  
 ===== v2.0.13 ===== ===== v2.0.13 =====
Line 8: Line 20:
   * Added: October, 2014   * Added: October, 2014
   * Link: http://ccb.jhu.edu/software/tophat/index.shtml   * Link: http://ccb.jhu.edu/software/tophat/index.shtml
-  * Version 2.0.13 is a maintenance release with the following changes:+  * Changelog:
      * removed SAMtools as an external dependency in order to avoid incompatibility issues with recent and future changes of SAMtools and its code library (an older, stable SAMtools version is now packaged with TopHat)      * removed SAMtools as an external dependency in order to avoid incompatibility issues with recent and future changes of SAMtools and its code library (an older, stable SAMtools version is now packaged with TopHat)
      * fixed a few code compatibility issues when compiling on OSX 10.9      * fixed a few code compatibility issues when compiling on OSX 10.9
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   * deploy using ansible<code>ansible-playbook compute.yml --limit=compute --tags=modules -K</code>   * deploy using ansible<code>ansible-playbook compute.yml --limit=compute --tags=modules -K</code>
  
 +===== v2.1.0 =====
 +  * Version: 2.1.0
 +  * Added: July, 2015
 +  * Link: http://ccb.jhu.edu/software/tophat/index.shtml
 +
 +=== Installation ===
 +  * Tophat2 is already compiled, just download the tarball & copy content to /export/apps<code>wget http://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.Linux_x86_64.tar.gz
 +tar -xvf tophat-2.1.0.Linux_x86_64.tar.gz
 +cd tophat-2.1.0.Linux_x86_64/
 +sudo mkdir /export/apps/tophat2/2.1.0
 +sudo cp -r . /export/apps/tophat2/2.1.0/
 +</code>
  
tophat-software.txt · Last modified: 2015/07/23 09:38 by joguya