User Tools

Site Tools


tassel-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
tassel-software [2015/09/22 17:02]
aorth [Installation]
tassel-software [2015/09/22 17:08] (current)
aorth
Line 3: Line 3:
  
 ===== Information ===== ===== Information =====
-  * Version: ​4.0 +  * Version: ​5.2.9 
-  * Added: ​August2014+  * Added: ​September2015
   * Link: http://​www.maizegenetics.net/​tassel   * Link: http://​www.maizegenetics.net/​tassel
  
Line 14: Line 14:
 Load one version into your shell'​s environment:​ Load one version into your shell'​s environment:​
  
-<​code>​$ module load tassel/4.0</​code>​+<​code>​$ module load tassel/5.2.9</​code>​
  
 ==== Memory Usage/​Settings ==== ==== Memory Usage/​Settings ====
Line 25: Line 25:
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ git clone git://git.code.sf.net/p/tassel/tassel3-standalone ​tassel3 +<​code>​$ git clone https://bitbucket.org/tasseladmin/tassel-5-standalone.git 
-$ cd tassel3/ +$ cd tassel-5-standalone 
-$ git checkout ​V3.0.165 +$ git checkout ​V5.2.9 
-$ sudo mkdir -p /​export/​apps/​tassel/​3.0.165 +$ sudo mkdir -p /​export/​apps/​tassel/​5.2.9 
-$ sudo cp -rv * /​export/​apps/​tassel/​3.0.165</​code>​+$ sudo cp -rv * /​export/​apps/​tassel/​5.2.9</​code>​
  
 ===== Sample Script ===== ===== Sample Script =====
 Sample script for running via SLURM: Sample script for running via SLURM:
  
-<​file>#​!/​bin/​env bash+<​file>#​!/usr/bin/env bash
  
 #SBATCH -p batch #SBATCH -p batch
Line 40: Line 40:
 #SBATCH -n 10 #SBATCH -n 10
  
-current_date=$(date +%b_%d)+current_date=$(date +%Y-%m-%d)
  
 DATADIR="/​home/​monyango/​data/​cullicoides_br/​$current_date"​ DATADIR="/​home/​monyango/​data/​cullicoides_br/​$current_date"​
tassel-software.txt · Last modified: 2015/09/22 17:08 by aorth