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--- tassel-software [2015/09/22 14:02]
aorth [Installation]
+++ tassel-software [2015/09/22 14:08] (current)
aorth
@@ Line 3: / Line 3: @@
 ===== Information =====
-  * Version: 4.0
+  * Version: 5.2.9
-  * Added: August, 2014
+  * Added: September, 2015
   * Link: http://www.maizegenetics.net/tassel
@@ Line 14: / Line 14: @@
 Load one version into your shell's environment:
-<code>$ module load tassel/4.0</code>
+<code>$ module load tassel/5.2.9</code>
 ==== Memory Usage/Settings ====
@@ Line 25: / Line 25: @@
 Notes from the sysadmin during installation:
-<code>$ git clone git://git.code.sf.net/p/tassel/tassel3-standalone tassel3
+<code>$ git clone https://bitbucket.org/tasseladmin/tassel-5-standalone.git
-$ cd tassel3/
+$ cd tassel-5-standalone
-$ git checkout V3.0.165
+$ git checkout V5.2.9
-$ sudo mkdir -p /export/apps/tassel/3.0.165
+$ sudo mkdir -p /export/apps/tassel/5.2.9
-$ sudo cp -rv * /export/apps/tassel/3.0.165</code>
+$ sudo cp -rv * /export/apps/tassel/5.2.9</code>
 ===== Sample Script =====
 Sample script for running via SLURM:
-<file>#!/bin/env bash
+<file>#!/usr/bin/env bash
 #SBATCH -p batch
@@ Line 40: / Line 40: @@
 #SBATCH -n 10
-current_date=$(date +%b_%d)
+current_date=$(date +%Y-%m-%d)
 DATADIR="/home/monyango/data/cullicoides_br/$current_date"

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