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subread-software [2018/08/23 13:46] (current)
aorth created
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 +====== subread ======
 +Subread package: high-performance read alignment, quantification and mutation discovery
  
 +===== Information =====
 +
 +  * Latest version: 1.6.2
 +  * Added: August, 2018
 +  * Link: http://​subread.sourceforge.net/​
 +
 +===== Usage =====
 +
 +See versions of subread which are available:
 +<​code>​$ module avail subread</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load subread/​1.6.2
 +$ subread-buildindex
 +$ featureCounts</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget '​https://​downloads.sourceforge.net/​project/​subread/​subread-1.6.2/​subread-1.6.2-Linux-x86_64.tar.gz?​r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fsubread%2Ffiles%2Fsubread-1.6.2%2Fsubread-1.6.2-Linux-x86_64.tar.gz%2Fdownload&​ts=1535020028'​ -O subread-1.6.2-Linux-x86_64.tar.gz
 +$ tar xf subread-1.6.2-Linux-x86_64.tar.gz
 +$ sudo mkdir -p /​export/​apps/​subread/​1.6.2
 +$ sudo cp -r subread-1.6.2-Linux-x86_64/​* /​export/​apps/​subread/​1.6.2/</​code>​
subread-software.txt · Last modified: 2018/08/23 13:46 by aorth