StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

• Version: 1.0.2
• Added: July, 2014
• Updated: March, 2015
• Link: https://ccb.jhu.edu/software/stringtie/

$ module avail stringtie

$ module load stringtie/1.0.2
$ stringtie -h

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.2.tar.gz
$ tar xf stringtie-1.0.2.tar.gz 
$ cd stringtie-1.0.2
$ scl enable devtoolset-2 bash
$ make release
$ sudo mkdir -p /export/apps/stringtie/1.0.2/bin
$ sudo cp stringtie /export/apps/stringtie/1.0.2/bin
$ sudo cp LICENSE README /export/apps/stringtie/1.0.2