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stringtie-software

stringtie

StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

Information

Usage

See versions of stringtie which are available

$ module avail stringtie

Load latest version and print help

$ module load stringtie/1.0.4
$ stringtie -h

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.4.tar.gz
$ scl enable devtoolset-3 bash
$ tar xf stringtie-1.0.4.tar.gz
$ cd stringtie-1.0.4
$ scl enable devtoolset-3 bash
$ make release
$ sudo mkdir -p /export/apps/stringtie/1.0.4/bin
$ sudo cp stringtie /export/apps/stringtie/1.0.4/bin
$ sudo cp LICENSE README /export/apps/stringtie/1.0.4
stringtie-software.txt · Last modified: 2015/08/04 12:02 by aorth