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star-software [2016/11/24 10:31] joguya |
star-software [2017/09/20 16:05] (current) aorth |
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====== STAR ====== | ====== STAR ====== | ||
- | + | STAR (Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner. | |
- | STAR(Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner. | + | |
===== Information ===== | ===== Information ===== | ||
- | * Version: 2.5.2b | + | * Version: 2.5.3a |
* Added: March, 2016 | * Added: March, 2016 | ||
- | * Updated: November, 2016 | + | * Updated: September, 2017 |
- | * Link: https://github.com/alexdobin/STAR/ | + | * Link: https://github.com/alexdobin/STAR |
===== Usage ===== | ===== Usage ===== | ||
- | See which versions of STAR are available: | + | See which versions of star are available: |
- | <code>$ module avail STAR</code> | + | <code>$ module avail star</code> |
- | Load STAR | + | Load one into your environment and run it: |
- | <code>$ module load STAR/2.5.2b</code> | + | <code>$ module load STAR/2.5.3a |
+ | $ STAR</code> | ||
===== Installation ====== | ===== Installation ====== | ||
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Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | <code> | + | <code>$ cd /tmp |
- | $ cd /tmp | + | $ wget https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz |
- | $ git clone --recursive https://github.com/alexdobin/STAR.git | + | $ tar xf 2.5.3a.tar.gz |
- | $ cd STAR/source | + | $ sudo mkdir /export/apps/star/2.5.3a/bin |
- | $ scl enable devtoolset-2 bash | + | $ sudo cp -rv STAR-2.5.3a/bin/Linux_x86_64/STAR* /export/apps/star/2.5.3a/bin</code> |
- | $ make | + | |
- | $ sudo mkdir /export/apps/star/2.5.2b/ | + | |
- | $ sudo cp -rv ../bin/Linux_x86_64/ /export/apps/star/2.5.2b/ | + | |
- | </code> | + |