User Tools

Site Tools


star-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
star-software [2016/11/24 10:31]
joguya
star-software [2017/09/20 16:05] (current)
aorth
Line 1: Line 1:
 ====== STAR ====== ====== STAR ======
- +STAR (Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner.
-STAR(Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner.+
  
 ===== Information ===== ===== Information =====
  
-  * Version: 2.5.2b+  * Version: 2.5.3a
   * Added: March, 2016   * Added: March, 2016
-  * Updated: ​November2016 +  * Updated: ​September2017 
-  * Link: https://​github.com/​alexdobin/​STAR/+  * Link: https://​github.com/​alexdobin/​STAR
  
 ===== Usage ===== ===== Usage =====
  
-See which versions of STAR are available:​ +See which versions of star are available:​ 
-<​code>​$ module avail STAR</​code>​+<​code>​$ module avail star</​code>​
  
-Load STAR +Load one into your environment and run it: 
-<​code>​$ module load STAR/2.5.2b</​code>​+<​code>​$ module load STAR/2.5.3a 
 +$ STAR</​code>​
  
 ===== Installation ====== ===== Installation ======
Line 22: Line 22:
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-$ cd /tmp +wget https://​github.com/​alexdobin/​STAR/​archive/​2.5.3a.tar.gz 
-git clone --recursive ​https://​github.com/​alexdobin/​STAR.git +tar xf 2.5.3a.tar.gz 
-$ cd STAR/source +$ sudo mkdir /​export/​apps/​star/​2.5.3a/bin 
-scl enable devtoolset-bash +$ sudo cp -rv STAR-2.5.3a/​bin/​Linux_x86_64/​STAR* /​export/​apps/​star/​2.5.3a/bin</​code>​
-$ make +
-$ sudo mkdir /​export/​apps/​star/​2.5.2b+
-$ sudo cp -rv ../​bin/​Linux_x86_64/​ /​export/​apps/​star/​2.5.2b/ +
-</​code>​+
star-software.txt · Last modified: 2017/09/20 16:05 by aorth