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sourmash-software [2017/05/30 17:15] aorth [Usage] |
sourmash-software [2019/01/29 15:19] (current) aorth |
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* Version: 1.0 | * Version: 1.0 | ||
* Added: May, 2017 | * Added: May, 2017 | ||
+ | * Updated: January, 2019 | ||
* Link: https://sourmash.readthedocs.io | * Link: https://sourmash.readthedocs.io | ||
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Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | <code>$ sudo mkdir /export/apps/sourmash | + | <code>$ module load python/3.5 |
- | $ sudo chown aorth /export/apps/sourmash | + | $ sudo mkdir -p /export/apps/sourmash/1.0 |
- | $ scl enable devtoolset-2 bash | + | $ sudo chown aorth /export/apps/sourmash/1.0 |
- | $ module load python/3.5.3 | + | |
$ python -m venv /export/apps/sourmash/1.0 | $ python -m venv /export/apps/sourmash/1.0 | ||
$ . /export/apps/sourmash/1.0/bin/activate | $ . /export/apps/sourmash/1.0/bin/activate | ||
+ | $ pip install --upgrade pip setuptools | ||
$ pip install Cython | $ pip install Cython | ||
$ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer | $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer | ||
+ | $ sudo yum install gcc-c++ | ||
$ pip install sourmash | $ pip install sourmash | ||
$ sudo chown -R root:root /export/apps/sourmash</code> | $ sudo chown -R root:root /export/apps/sourmash</code> |