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sourmash-software
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sourmash-software [2017/05/30 17:15] aorth [Usage] |
sourmash-software [2019/01/29 15:19] (current) aorth |
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| * Version: 1.0 | * Version: 1.0 | ||
| * Added: May, 2017 | * Added: May, 2017 | ||
| + | * Updated: January, 2019 | ||
| * Link: https://sourmash.readthedocs.io | * Link: https://sourmash.readthedocs.io | ||
| Line 19: | Line 20: | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | <code>$ sudo mkdir /export/apps/sourmash | + | <code>$ module load python/3.5 |
| - | $ sudo chown aorth /export/apps/sourmash | + | $ sudo mkdir -p /export/apps/sourmash/1.0 |
| - | $ scl enable devtoolset-2 bash | + | $ sudo chown aorth /export/apps/sourmash/1.0 |
| - | $ module load python/3.5.3 | + | |
| $ python -m venv /export/apps/sourmash/1.0 | $ python -m venv /export/apps/sourmash/1.0 | ||
| $ . /export/apps/sourmash/1.0/bin/activate | $ . /export/apps/sourmash/1.0/bin/activate | ||
| + | $ pip install --upgrade pip setuptools | ||
| $ pip install Cython | $ pip install Cython | ||
| $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer | $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer | ||
| + | $ sudo yum install gcc-c++ | ||
| $ pip install sourmash | $ pip install sourmash | ||
| $ sudo chown -R root:root /export/apps/sourmash</code> | $ sudo chown -R root:root /export/apps/sourmash</code> | ||
sourmash-software.txt · Last modified: 2019/01/29 15:19 by aorth
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