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sourmash-software [2017/05/30 17:15]
aorth [Usage]
sourmash-software [2019/01/29 15:19] (current)
aorth
Line 6: Line 6:
   * Version: 1.0   * Version: 1.0
   * Added: May, 2017   * Added: May, 2017
 +  * Updated: January, 2019
   * Link: https://​sourmash.readthedocs.io   * Link: https://​sourmash.readthedocs.io
  
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 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ sudo mkdir /​export/​apps/​sourmash +<​code>​$ module load python/​3.5 
-$ sudo chown aorth /​export/​apps/​sourmash +$ sudo mkdir -p /​export/​apps/​sourmash/1.0 
-$ scl enable devtoolset-2 bash +$ sudo chown aorth /​export/​apps/​sourmash/​1.0
-$ module load python/3.5.3+
 $ python -m venv /​export/​apps/​sourmash/​1.0 $ python -m venv /​export/​apps/​sourmash/​1.0
 $ . /​export/​apps/​sourmash/​1.0/​bin/​activate $ . /​export/​apps/​sourmash/​1.0/​bin/​activate
 +$ pip install --upgrade pip setuptools
 $ pip install Cython $ pip install Cython
 $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer
 +$ sudo yum install gcc-c++
 $ pip install sourmash $ pip install sourmash
 $ sudo chown -R root:root /​export/​apps/​sourmash</​code>​ $ sudo chown -R root:root /​export/​apps/​sourmash</​code>​
sourmash-software.1496153702.txt.gz · Last modified: 2017/05/30 17:15 by aorth