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sourmash-software [2017/05/30 14:13]
aorth created
sourmash-software [2019/01/29 12:19] (current)
aorth
Line 6: Line 6:
   * Version: 1.0   * Version: 1.0
   * Added: May, 2017   * Added: May, 2017
 +  * Updated: January, 2019
   * Link: https://sourmash.readthedocs.io   * Link: https://sourmash.readthedocs.io
  
 ===== Usage ===== ===== Usage =====
  
-See versions of spades which are available:+See versions of sourmash which are available:
 <code>$ module avail sourmash</code> <code>$ module avail sourmash</code>
  
 +Load one version into your environment and run it: 
 +<code>$ module load sourmash/1.0 
 +$ sourmash</code>
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ sudo mkdir /export/apps/sourmash +<code>$ module load python/3.5 
-$ sudo chown aorth /export/apps/sourmash +$ sudo mkdir -p /export/apps/sourmash/1.0 
-$ scl enable devtoolset-2 bash +$ sudo chown aorth /export/apps/sourmash/1.0
-$ module load python/3.5.3+
 $ python -m venv /export/apps/sourmash/1.0 $ python -m venv /export/apps/sourmash/1.0
 $ . /export/apps/sourmash/1.0/bin/activate $ . /export/apps/sourmash/1.0/bin/activate
 +$ pip install --upgrade pip setuptools
 $ pip install Cython $ pip install Cython
 $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer
 +$ sudo yum install gcc-c++
 $ pip install sourmash $ pip install sourmash
 $ sudo chown -R root:root /export/apps/sourmash</code> $ sudo chown -R root:root /export/apps/sourmash</code>
sourmash-software.1496153612.txt.gz · Last modified: 2017/05/30 14:13 by aorth