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solexaqa-software

SolexaQA++

SolexaQA calculates sequence quality statistics and creates visual representations of data quality for second-generation sequencing data.

v3.1.3

Usage

  • Show all available versions of SolexaQA++
    module avail SolexaQA++
  • Load SolexaQA++ module:
    module load SolexaQA++/3.1.3

Installation

  • download SolexaQA++ tarball - its already compiled but you can recompile it if you wish
    wget "http://downloads.sourceforge.net/project/solexaqa/src/SolexaQA%2B%2B_v3.1.3.zip?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fsolexaqa%2Ffiles%2F&ts=1423563723&use_mirror=liquidtelecom" -O "SolexaQA++_v3.1.3.zip"
    unzip SolexaQA++_v3.1.3.zip
    cd SolexaQA++_v3.1.3
    chmod +x Linux_x64/SolexaQA++
    sudo mkdir -p /export/apps/SolexaQA++/3.1.3/
    sudo cp Linux_x64/SolexaQA++ /export/apps/SolexaQA++/3.1.3/
  • SolexaQA++ module file
    #%Module1.0
    #####################################################################
    ##
    ## SolexaQA++ Modulefile
    ## By James Oguya, j.oguya@cgiar.org
    ## February, 2015
    ##
    
    set appname         SolexaQA++
    set version         3.1.3
    set prefix          /export/apps/${appname}/${version}
    set exec_prefix     ${prefix}
    set url "http://solexaqa.sourceforge.net/"
    set msg "SolexaQA calculates sequence quality statistics and creates visual representations of data quality for second-generation sequencing data.\SolexaQA++ Official Site: $url\n"
    
    module-whatis $msg
    
    proc ModulesHelp { } {
        puts stderr "$msg"
    }
    
    conflict        SolexaQA++
    
    prepend-path    PATH    ${exec_prefix}
  • deploy the new module using ansible
    ansible-playbook site.yml -u provisioning -K -s --limit=compute --tags=modules
solexaqa-software.txt · Last modified: 2015/02/10 14:48 by joguya