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soapsnp-software [2018/03/27 00:00] (current)
aorth created
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 +====== SOAPsnp ======
 +SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). Despite its name, the program is a resequencing utility that can assemble consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on the known reference.
  
 +===== Information =====
 +
 +  * Version: 1.03
 +  * Added: March, 2018
 +  * Link: http://​soap.genomics.org.cn/​soapsnp.html
 +
 +===== Usage =====
 +
 +See which versions of SOAPsnp are available:
 +<​code>​$ module avail SOAPsnp</​code>​
 +
 +Load a version of SOAPsnp into your environment and run it:
 +<​code>​$ module load SOAPsnp/​1.03
 +$ soapsnp</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ wget http://​soap.genomics.org.cn/​down/​SOAPsnp-v1.03.tar.gz
 +$ tar xf SOAPsnp-v1.03.tar.gz
 +$ cd SOAPsnpZ
 +$ make
 +$ sudo mkdir -p /​export/​apps/​SOAPsnp/​1.03/​bin
 +$ sudo cp soapsnp /​export/​apps/​SOAPsnp/​1.03/​bin
 +$ sudo cp COPYING readme release /​export/​apps/​SOAPsnp/​1.03</​code>​
soapsnp-software.txt · Last modified: 2018/03/27 00:00 by aorth