User Tools

Site Tools


snpeff-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision
Previous revision
snpeff-software [2015/07/28 07:13]
aorth created
snpeff-software [2017/02/11 09:10] (current)
joguya
Line 1: Line 1:
-====== SnpEff ======+====== SnpEff & SnpSift ======
 SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).
 +
 +SnpSift is a toolbox that allows you to filter and manipulate annotated files.
  
 ===== Information ===== ===== Information =====
Line 22: Line 24:
 $ sudo cp -r snpEff/* /export/apps/snpeff/4.1g</code> $ sudo cp -r snpEff/* /export/apps/snpeff/4.1g</code>
  
-Create shell script wrappers for ''snpEff.jar'' and ''SnpSift.jar'', ie:+Create shell script wrappers for ''snpEff.jar'' and ''SnpSift.jar'', ie ''snpEff'':
  
 <code>#!/bin/env bash <code>#!/bin/env bash
snpeff-software.1438067613.txt.gz · Last modified: 2015/07/28 07:13 by aorth