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snp-pipeline-software
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snp-pipeline-software [2018/06/01 20:58] aorth created |
snp-pipeline-software [2019/01/29 16:53] (current) aorth |
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| * Version: 1.0.1 | * Version: 1.0.1 | ||
| * Added: June, 2018 | * Added: June, 2018 | ||
| + | * Updated: January, 2019 | ||
| * Link: https://snp-pipeline.readthedocs.io/en/latest/installation.html | * Link: https://snp-pipeline.readthedocs.io/en/latest/installation.html | ||
| Line 21: | Line 22: | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | <code>$ cd /tmp | + | <code>$ module load python/3.5 |
| - | $ module load python/3.5.3 | + | |
| $ sudo mkdir -p /export/apps/snp-pipeline/1.0.1 | $ sudo mkdir -p /export/apps/snp-pipeline/1.0.1 | ||
| - | $ sudo chown -R aorth:aorth /export/apps/snp-pipeline/1.0.1 | + | $ sudo chown aorth /export/apps/snp-pipeline/1.0.1 |
| $ python -m venv /export/apps/snp-pipeline/1.0.1 | $ python -m venv /export/apps/snp-pipeline/1.0.1 | ||
| $ . /export/apps/snp-pipeline/1.0.1/bin/activate | $ . /export/apps/snp-pipeline/1.0.1/bin/activate | ||
| - | $ pip3 install --upgrade pip setuptools | + | $ pip install --upgrade pip setuptools |
| - | $ pip3 install snp-pipeline | + | $ pip install snp-pipeline==1.0.1 |
| $ sudo chown -R root:root /export/apps/snp-pipeline/1.0.1</code> | $ sudo chown -R root:root /export/apps/snp-pipeline/1.0.1</code> | ||
snp-pipeline-software.1527875889.txt.gz · Last modified: 2018/06/01 20:58 by aorth
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