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snp-pipeline-software [2018/06/01 20:58]
aorth created
snp-pipeline-software [2019/01/29 16:53] (current)
aorth
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   * Version: 1.0.1   * Version: 1.0.1
   * Added: June, 2018   * Added: June, 2018
 +  * Updated: January, 2019
   * Link: https://​snp-pipeline.readthedocs.io/​en/​latest/​installation.html   * Link: https://​snp-pipeline.readthedocs.io/​en/​latest/​installation.html
  
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 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ cd /tmp +<​code>​$ module load python/3.5
-$ module load python/3.5.3+
 $ sudo mkdir -p /​export/​apps/​snp-pipeline/​1.0.1 $ sudo mkdir -p /​export/​apps/​snp-pipeline/​1.0.1
-$ sudo chown -R aorth:aorth /​export/​apps/​snp-pipeline/​1.0.1+$ sudo chown aorth /​export/​apps/​snp-pipeline/​1.0.1
 $ python -m venv /​export/​apps/​snp-pipeline/​1.0.1 $ python -m venv /​export/​apps/​snp-pipeline/​1.0.1
 $ . /​export/​apps/​snp-pipeline/​1.0.1/​bin/​activate $ . /​export/​apps/​snp-pipeline/​1.0.1/​bin/​activate
-pip3 install --upgrade pip setuptools +pip install --upgrade pip setuptools 
-pip3 install snp-pipeline+pip install snp-pipeline==1.0.1
 $ sudo chown -R root:root /​export/​apps/​snp-pipeline/​1.0.1</​code>​ $ sudo chown -R root:root /​export/​apps/​snp-pipeline/​1.0.1</​code>​
snp-pipeline-software.1527875889.txt.gz · Last modified: 2018/06/01 20:58 by aorth