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snakemake-software [2019/10/08 12:14] (current)
aorth created
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 +====== Snakemake ======
 +The Snakemake workflow management system is a tool to create reproducible and scalable data analyses
  
 +===== Information =====
 +
 +  * Version: 5.7.0
 +  * Added: October, 2019
 +  * Link: https://​snakemake.readthedocs.io/​en/​stable/​
 +
 +===== Usage =====
 +
 +See versions of snakemake which are available:
 +<​code>​$ module avail snakemake</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load snakemake/​5.7.0
 +$ snakemake</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ sudo mkdir -p /​export/​apps/​snakemake/​5.7.0
 +$ sudo chown aorth /​export/​apps/​snakemake/​5.7.0
 +$ python3.6 -m venv /​export/​apps/​snakemake/​5.7.0
 +$ source /​export/​apps/​snakemake/​5.7.0/​bin/​activate
 +$ pip install snakemake
 +$ sudo chown -R root:root /​export/​apps/​snakemake/​5.7.0</​code>​
snakemake-software.txt · Last modified: 2019/10/08 12:14 by aorth