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snakemake-software

Snakemake

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses

Information

Usage

See versions of snakemake which are available:

$ module avail snakemake

Load one version into your environment and run it:

$ module load snakemake/5.7.0
$ snakemake

Installation

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/snakemake/5.7.0
$ sudo chown aorth /export/apps/snakemake/5.7.0
$ python3.6 -m venv /export/apps/snakemake/5.7.0
$ source /export/apps/snakemake/5.7.0/bin/activate
$ pip install snakemake
$ sudo chown -R root:root /export/apps/snakemake/5.7.0
snakemake-software.txt · Last modified: 2019/10/08 12:14 by aorth